Acinetobacter baumannii

Actinomyces

Adenovirus

Adenovirus Group C

Aerococcus urinae

Anaplasma phagocytophilum

Arcanobacter hemolyticum

ArmA

Atopobium vaginae

Bacteroides fragilis

Bartonella henselae/quintana

Bartonella quintana

blaCTX-M-Group 1

blaCTX-M-Group 2

blaCTX-M-Group 25

blaCTX-M-Group 8

blaCTX-M-Group 9

blaFOX

blaGES-3

blaIMP

blaKPC

blaNDM

blaOXA-1

blaOXA-48 Grp

blaPER-1

blaPER-2

blaSHV

blaTEM

blaVEB

blaVIM

Bocavirus

Bordetella pertussis

Bordetella species

Borrelia afzelii

Borrelia burgdorferi

Borrelia garinii

Bourbon virus

BVAB-2

Candida albicans

Candida dubliniensis

Candida glabrata

Candida krusei

Candida lusitaniae

Candida parapsilosis

Candida tropicalis

Chlamydia trachomatis

Chlamydophila pneumoniae

Citrobacter braakii/freundii

Citrobacter koseri

Clostridium novyi/septicum

Clostridium perfringens

Coronavirus (229E, HKU1, NL63, OC43)

Corynebacterium amycolatum

Corynebacterium striatum

Corynebacterium urealyticum

COVID-19 (Coronavirus)

Coxsackievirus

Cryptosporidium spp.

Cryptosporidium parvum

DfrA

DfrB

EBV (mononucleosis)

Echinococcus spp.

Echovirus

Entamoeba histolytica

Enterohemorrhagic

Escherichia coli

Enterobacter aerogenes

Enterobacter cloacae

Enterococcus faecalis

Enterococcus faecium

Enterovirus

Epstein-Barr Virus (HHV-4)

ErmB

Escherichia coli

Finegoldia magna

Fusobacterium necrophorum

Gardnerella vaginalis

Giardia lamblia

Haemophilus ducreyi

Haemophilus influenzae A

Haemophilus influenzae B

HBV

HCV

HHV-1 (HSV-1)

HHV-2 (HSV-2)

HHV-4 (Epstein-Barr Virus)

HHV-5 (CMV)

HHV-6

HHV-7 (Roseola Virus)

HIV 1

HIV 2

HMPV A

HMPV B

HPV 16

HPV18

HPV 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66 and 68

HRV A

HRV B

HTLV-1/2

Influenza A

Influenza A H1N1

Influenza B

Influenza C

Kingella kingae

Klebsiella aerogenes

Klebsiella oxytoca/michiganensis

Klebsiella pneumoniae

Lactobacillus crispatus

Lactobacillus gasseri

Lactobacillus iners

Lactobacillus jensenii

Legionella longbeachae

Legionella pneumophila

Listeria spp.

Measles virus

MecA

MefE

Megasphaera Type 1

Megasphaera Type 2

Megasphaera-like Type 1

Megasphaera-like Type 2

Microsporum audouinii/canis/ferrugineum

Mobiluncus curtisii

Mobiluncus mulieris

Moraxella catarrhalis

Morganella morganii

MRSA

Mycoplasma genitalium

Mycoplasma hominis

Mycoplasma pneumoniae

Neisseria gonorrhoeae

Nocardia spp.

Pan bacteria

Parainfluenza virus (type 1-4)

Parechovirus

Parvovirus B19

Peptostreptococcus anaerobius

Peptostreptococcus micros

Peptostreptococcus prevotii

Peptostreptococcus tetradius

PIV 1

PIV 2

PIV 3

PIV 4

Pneumocystis jirovecii

Polyomavirus BK

Polyomavirus JC

Prevotella bivia

Prevotella loescheii

Prevotella melaninogenica

Proteus mirabilis

Proteus vulgaris

Pseudomonas aeruginosa

QnrA

QnrB

QnrS

Rhinovirus (types A & B)

Rickettsia rickettsii (discriminates japonica)

Rickettsia rickettsii (pan Rickettsia)

RSV A

RSV B

Salmonella enterica

Salmonella enterica serovar Typhi

Salmonella enterica serovar paratyphi

Serratia marcescens

Staphylococcus aureus

Staphylococcus aureus Panton-Valentine leukocidin gene

Staphylococcus epidermidis

Staphylococcus lugdunensis

Staphylococcus PAN

Staphylococcus saprophyticus

Stenotrophomonas maltophilia

Streptococcus agalactiae (GBS)

Streptococcus anginosus

Streptococcus pneumoniae

Streptococcus pyogenes (Group A)

Sul1

Sul2

Sul3

TetM

TetP

Treponema pallidum

Trichomonas spp.

Trichomonas vaginalis

Trichophyton mentagrophytes complex

Trichophyton rubrum

Trichophyton tonsurans/equinum

Trichophyton violaceum

Ureaplasma parvum

Ureaplasma urealyticum

Van A

Van B

Van C

Van C2

Van C3

Van Z

Varicella zoster (Shingles)

West Nile Virus

Zika Virus

Class A β-lactamase (blaKPC)

Class A β-lactamase (CTX-M-Group 1)

Class B metallo-β-lactamase (blaNDM)

Fluoroquinolones (QNR)

Methicillin (mecA)

Sulfonamides (SUL)

Trimethoprim (DFR)

Vancomycin (vanA)

Vancomycin (vanB)